Publications

1. Szepesi-Nagy, I, Borosta, R, Szabo, Z, Tusnady, GE, Pongor, LS and Rona, G (2026) Frag'n'Flow: automated workflow for large-scale quantitative proteomics in high performance computing environments. BMC Bioinformatics : .

2. Garami, K, Péczka, N, Petri, L, Imre, T, Langó, T, Szabó, Z, Orgován, Z, Szabó, PT, Keserü, GM and Ábrányi-Balogh, P (2025) Target Agnostic Photoaffinity Labelling by Sulfonylhydrazones. Angew Chem Int Ed Engl 64: e202408701.

3. Fichó, E, Pancsa, R, Magyar, C, Kalman, ZE, Schád, É, Németh, BZ, Simon, I, Dobson, L and Tusnády, GE (2025) MFIB 2.0: a major update of the database of protein complexes formed by mutual folding of the constituting protein chains. Nucleic Acids Res 53: D487-D494.

4. Dobson, L, Tusnády, GE and Tompa, P (2025) Regularly updated benchmark sets for statistically correct evaluations of AlphaFold applications. Brief Bioinform 26: .

5. Tusnády, GE and Gerdán, C (2025) TmDet 4.0: determining membrane orientation of transmembrane proteins from 3D structure. Nucleic Acids Res 53: W542-W546.

6. Langó, T, Kuffa, KR and Tusnády, GE (2025) Optimized Biotinylated Peptide Detection Method for Characterizing the Cell Surface Proteome. Methods Mol Biol 2908: 13-31.

7. Bajtai, E, Kiss, C, Bakos, É, Langó, T, Lovrics, A, Schád, É, Tisza, V, Hegedűs, K, Fürjes, P, Szabó, Z, Tusnády, GE, Szakács, G, Tantos, Á, Spisák, S, Tóvári, J and Füredi, A (2025) Therapy-induced senescence is a transient drug resistance mechanism in breast cancer. Mol Cancer 24: 128.

8. Bakos, É, Bujdosó-Székely, V, Patik, I, Király, L, Langó, T, Kozák, E, Cserepes, MT, Tóvári, J and Özvegy-Laczka, C (2025) Cancer-type OATP1B3-V1 is a functional plasma membrane transporter mediating increased uptake of chemotherapeutics in vitro and in vivo. Eur J Pharm Sci 209: 107046.

9. Füredi, A, Tóth, S, Hegedüs, K, Szabó, PT, Gaál, A, Barta, G, Naszályi, LN, Kiss, K, Bölcskei, K, Szeltner, Z, Bajtai, E, Gombos, B, Kiss, D, Cserepes, MT, Kiss, A, Pokreisz, P, Kenner, L, Högler, S, Magyar, C, Cowles, JD, Csiszar, Á, Tóvári, J, Szüts, D, Helyes, Z, Varga, Z, Mező, G and Szakács, G (2025) Safe delivery of a highly toxic anthracycline derivative through liposomal nanoformulation achieves complete cancer regression. Mol Cancer 24: 269.

10. Kuffa, KR, Langó, T, Czirók, A, Tárnoki-Zách, J, Bősze, S, Tusnády, GE and Szabó, Z (2025) Optimization of Methods for the Quantitative Analysis of Global Cell Surface Proteome and Cell Surface Polarization. Int J Mol Sci 26: .