Publication list of László Dobson

1. Dobson, L, Tusnády, GE and Tompa, P (2025) Regularly updated benchmark sets for statistically correct evaluations of AlphaFold applications. Brief Bioinform 26: .

2. Fichó, E, Pancsa, R, Magyar, C, Kalman, ZE, Schád, É, Németh, BZ, Simon, I, Dobson, L and Tusnády, GE (2025) MFIB 2.0: a major update of the database of protein complexes formed by mutual folding of the constituting protein chains. Nucleic Acids Res 53: D487-D494.

3. Dobson, L, Gerdán, C, Tusnády, S, Szekeres, LI, Kuffa, KR, Langó, T, Zeke, A and Tusnády, GE (2024) UniTmp: unified resources for transmembrane proteins. Nucleic Acids Res 52: D572-D578.

4. Kumar, M, Michael, S, Alvarado-Valverde, J, Zeke, A, Lazar, T, Glavina, J, Nagy-Kanta, E, Donagh, JM, Kalman, ZE, Pascarelli, S, Palopoli, N, Dobson, L, Suarez, CF, van Roey, K, Krystkowiak, I, Griffin, JE, Nagpal, A, Bhardwaj, R, Diella, F, Mészáros, B, Dean, K, Davey, NE, Pancsa, R, Chemes, LB and Gibson, TJ (2024) ELM-the Eukaryotic Linear Motif resource-2024 update. Nucleic Acids Res 52: D442-D455.

5. Zeke, A, Gibson, TJ and Dobson, L (2024) Linear motifs regulating protein secretion, sorting and autophagy in Leishmania parasites are diverged with respect to their host equivalents. PLoS Comput Biol 20: e1011902.

6. Jambrich, MA, Tusnády, GE and Dobson, L (2023) How AlphaFold2 shaped the structural coverage of the human transmembrane proteome. Sci Rep 13: 20283.

7. Tusnády, GE, Zeke, A, Kálmán, KE, Kálmán, ZE, Fatoux, M, Ricard-Blum, S, Gibson, TJ and Dobson, L (2023) LeishMANIAdb: a comparative resource for Leishmania proteins. Database (Oxford) 2023: .

8. Dobson, L, Szekeres, LI, Gerdán, C, Langó, T, Zeke, A and Tusnády, GE (2023) TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures. Nucleic Acids Res 51: D517-D522.

9. Quaglia, F, Mészáros, B, Salladini, E, Hatos, A, Pancsa, R, Chemes, LB, Pajkos, M, Lazar, T, Peña-Díaz, S, Santos, K, Santos, J, Ács, V, Farahi, N, Fichó, E, Aspromonte, MC, Bassot, C, Chasapi, A, Davey, NE, Davidović, R, Dobson, L, Elofsson, A, Erdős, G, Gaudet, P, Giglio, M, Glavina, J, Iserte, J, Iglesias, V, Kálmán, ZE, Lambrughi, M, Leonardi, E, Longhi, S, Macedo-Ribeiro, S, Maiani, E, Marchetti, J, Marino-Buslje, C, Mészáros, A, Monzon, AM, Minervini, G, Nadendla, S, Nilsson, JF, Novotný, M, Ouzounis, CA, Palopoli, N, Papaleo, N, Papaleo, E, Pereira, PJ, Pozzati, G, Promponas, VJ, Pujols, J, Rocha, AC, Salas, M, Sawicki, LR, Schad, É, Shenoy, A, Szaniszló, T, Tsirigos, KD, Veljkovic, N, Parisi, G, Ventura, S, Dosztányi, Z, Tompa, P, Tosatto, SC and Piovesan, D (2022) DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res 50: D480-D487.

10. Kumar, M, Michael, S, Alvarado-Valverde, J, Mészáros, B, Sámano-Sánchez, H, Zeke, A, Dobson, L, Lazar, T, Örd, M, Nagpal, A, Farahi, N, Käser, M, Kraleti, R, Davey, NE, Pancsa, R, Chemes, LB and Gibson, TJ (2022) The Eukaryotic Linear Motif resource: 2022 release. Nucleic Acids Res 50: D497-D508.