Publication list of András Zeke

1. Dobson, L, Gerdán, C, Tusnády, S, Szekeres, LI, Kuffa, KR, Langó, T, Zeke, A and Tusnády, GE (2024) UniTmp: unified resources for transmembrane proteins. Nucleic Acids Res 52: D572-D578.

2. Kumar, M, Michael, S, Alvarado-Valverde, J, Zeke, A, Lazar, T, Glavina, J, Nagy-Kanta, E, Donagh, JM, Kalman, ZE, Pascarelli, S, Palopoli, N, Dobson, L, Suarez, CF, van Roey, K, Krystkowiak, I, Griffin, JE, Nagpal, A, Bhardwaj, R, Diella, F, Mészáros, B, Dean, K, Davey, NE, Pancsa, R, Chemes, LB and Gibson, TJ (2024) ELM-the Eukaryotic Linear Motif resource-2024 update. Nucleic Acids Res 52: D442-D455.

3. Zeke, A, Gibson, TJ and Dobson, L (2024) Linear motifs regulating protein secretion, sorting and autophagy in Leishmania parasites are diverged with respect to their host equivalents. PLoS Comput Biol 20: e1011902.

4. Zeke, A, Alexa, A and Reményi, A (2024) Discovery and Characterization of Linear Motif Mediated Protein-Protein Complexes. Adv Exp Med Biol 3234: 59-71.

5. Dobson, L, Szekeres, LI, Gerdán, C, Langó, T, Zeke, A and Tusnády, GE (2023) TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures. Nucleic Acids Res 51: D517-D522.

6. Tusnády, GE, Zeke, A, Kálmán, ZE, Kálmán, KE, Fatoux, M, Ricard-Blum, S, Gibson, TJ and Dobson, L (2023) LeishMANIAdb: a comparative resource for Leishmania proteins. Database (Oxford) 2023: .

7. Amin, HM, Szabo, B, Abukhairan, R, Zeke, A, Kardos, J, Schad, É and Tantos, Á (2023) In Vivo and In Vitro Characterization of the RNA Binding Capacity of SETD1A (KMT2F). Int J Mol Sci 24: .

8. Zeke, A, Takács, T, Sok, P, Németh, K, Kirsch, K, Egri, P, Póti, ÁL, Bento, I, Tusnády, GE and Reményi, A (2022) Structural insights into the pSer/pThr dependent regulation of the SHP2 tyrosine phosphatase in insulin and CD28 signaling. Nat Commun 13: 5439.

9. Kumar, M, Michael, S, Alvarado-Valverde, J, Mészáros, B, Sámano-Sánchez, H, Zeke, A, Dobson, L, Lazar, T, Örd, M, Nagpal, A, Farahi, N, Käser, M, Kraleti, R, Davey, NE, Pancsa, R, Chemes, LB and Gibson, TJ (2022) The Eukaryotic Linear Motif resource: 2022 release. Nucleic Acids Res 50: D497-D508.

10. Dobson, L, Zeke, A and Tusnády, GE (2021) PolarProtPred: predicting apical and basolateral localization of transmembrane proteins using putative short linear motifs and deep learning. Bioinformatics 37: 4328-4335.